Depends on what you are trying to do achieve, it sounds like you are doing a combination of 3d tracking or something.
But to answer your question technically no, you can only track one part at a time, you could track multiple points to gauge rotation and scale but its only going to affect one object at the end. You would create a null object target the track to the null and then submit. You would need to do another track on the second point separately.
No if you are trying to track to simulate a parallax in 3d space, one thing you can do is us AE expressions, if you dont know how to do this, do a simple google search, and something like this would get you where you need to be.